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default chastity filter  (Illumina Inc)


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    Illumina Inc default chastity filter
    Default Chastity Filter, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/default+chastity+filter/default+chastity+filter/pmc06390964-50-17-16
    Average 90 stars, based on 1 article reviews
    default chastity filter - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Sequencing:

    Article Title: An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations.
    Article Snippet: Sequence reads were mapped to mm9 (NCBI 37) using Burrows-Wheeler Aligner (BWA)29, and duplicate reads were marked using Picard-tools (http://picard.sourceforge.net). .. Reads passing Illumina’s default chastity filter (total reads) were used to generate library statistics using Samtools Flagstats30, where reads with the exact same sequence are identified as ‘duplicates’, non-duplicate reads with a MapQ45 are identified as distinct uniquely aligned reads and reads with a MapQo5 are identified as distinct multi-aligned reads. ..

    Comparison:

    Article Title: Methods for small RNA sequencing
    Article Snippet: Quality control of the reads was done during alignment by Novoalign software that filters out low quality reads by base quality score. .. Comparison studies showed that this Novoalign filters performed similarly to the Illumina default chastity filter. .. Reads were separated using Novobarcode software (http://www.novocraft.com), and aligned to human genome hg18 (NCBI build 36.1) using Novoalign software (http://www. novocraft.com) with default settings but for the following modifications: an aligned read requires a minimum of 16 nts in length with good base quality after 3′ adapter trimming and a perfect match to the reference genome.

    Quantitative Proteomics:

    Article Title: Transcriptomic analysis by RNA sequencing reveals that hepatic interferon-induced genes may be associated with feed efficiency in beef heifers.
    Article Snippet: .. Before differential expression analysis, low quality reads were removed from further analysis if they did not pass Illumina’s default chastity filter or if they were of low quality (phred score < 15). ..



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